Index

Bookmarks
Manuals And Documents
Athena Examples
Sector 13
CSC NOTE
TDR
MC Production
Job Submission
Trigger
WZ Analysis
DESD

Bookmarks

• http://atlas.web.cern.ch/Atlas/index.html
  ATLAS HOME
  
• https://twiki.cern.ch/twiki/bin/viewauth/Atlas/MuonSoftwareShifts
  Muon Software Shifts
  
• http://atlas-runquery.cern.ch/query.py?q=f+r+142193+%2F+sh+all
  Run Query
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/WorkBook
  WorkBook, start from here for the Athena installation and for building new packages (see Creating a new Package).
  
• http://alxr.usatlas.bnl.gov/lxr/search
  Search, use this to look for Atlas routines and variables (same as grep for Unix).
  
• http://atlas-sw.cern.ch/cgi-bin/viewcvs-atlas.cgi/offline/
  CVS, here you find all the Atlas code.
  
• https://svnweb.cern.ch/cern/wsvn/atlasoff
  WebSVN
  
• https://svnweb.cern.ch/trac/atlasoff
  Trac
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/SoftwareDevelopmentWorkBookSVN
  How to use SVN
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/SoftwareDevelopmentWorkBookSVN
  PAT: Physics Analysis Tools, here you can find links to software workshops, documentation and tutorials.
  
• https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/PhysicsAnalysisTools
  Physics Analysis Wiki Page, same as above. You can also find the link to
  https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/ParticleEvent Particle Event, the package which defines the AOD particle classes.
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/InstallingAtlasSoftware
  Installing Atlas Software, here you find the instructions to install Athena on your PC.
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/EventDataModel
  Event Data Model describes how software is organized, which are the classes and what has to be written to ESD and AOD.
  
• https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/StoregateKeysForAOD
  StoregateKeysForAOD: Storegate data acces keys are needed to read the container class (particle, tau, muon etc. etc.) (same as bank name for BLOCAT for AC users).
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/ComBinedNTupleAthena
  CBNT, Combined Ntuple variables are listed here.
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/CBNTMigrationToAA
  CBNTAA, how to migrate from CBNT.
  
• https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/AthenaAwareNTuple
  AthenaAwareNTuple
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/TriggerCBNT
  CBNTAA Trigger, Trigger block in CBNTAA.
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/WriteReadDataViaPool
  WriteReadDataViaPool, should help in writing the requirement file ... but not very clear (at least to me).
  
• https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/MuonPerformance
  Muon Performance.
  
• http://atlas.web.cern.ch/Atlas/GROUPS/SOFTWARE/OO/domains/Reconstruction/inAthena/inAthena.htm
  Reconstruction in Athena, links to reconstruction software (recoflow.ps).
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/MuonReconstruction
  Atlas Muon Reconstruction.
  
• https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/MuonRecoPedia
  MuonRecoPedia.
  
• https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/DPDMakingTools
  Tools for Making Derived Physics Datasets (DPD).
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/CoreSoftware
  The ATLAS Core Software .
  
• https://twiki.cern.ch/twiki/bin/view/Atlas/AthenaFramework
  AthenaFramework.
  

Manuals and Documents

Athena Developer Guide, useful to understand how to read and write data from AOD and ESD.

https://twiki.cern.ch/twiki/bin/view/Atlas/AthenaDevGuide
The Athena Developer Guide (online version) .
Athena User Guide
Gaudi Developers Guide
PYTHIA MANUAL
Athena Job Configuration http://wlav.web.cern.ch/wlav/joboptions/
ROOT MANUAL (see also http://root.cern.ch/root/Reference.html)
PYTHON MANUAL
PYTHON Scripting for Athena http://wlav.web.cern.ch/wlav/athena/
POOL User Guide http://pool.cern.ch/currentReleaseDoc/UserGuide.html
Final Report ATLAS AOD/ESD, describes what is ESD, AOD and TAG and what should be their content.
ATLAS Computing Model, ... gives also an idea of the way a typical analysis should work starting from TAG down to RAW data.
CLHEP - A Class Library for High Energy Physics http://proj-clhep.web.cern.ch/proj-clhep/
DOXYGEN Documenation http://atlas-php.web.cern.ch/atlas-php/docs/docs.php
Building the Doxygen Documentation https://twiki.cern.ch/twiki/bin/view/Atlas/DoxygenDocumentation#Building_the_Doxygen_Documentati

Examples

• Histogram Booking and Filling (http://alxr.usatlas.bnl.gov/lxr/source/atlas/Control/AthenaExamples/AthExHistNtup/src/Hist.cxx, http://alxr.usatlas.bnl.gov/lxr/source/atlas/Control/AthenaExamples/AthExHistNtup/AthExHistNtup/Hist.h, http://alxr.usatlas.bnl.gov/lxr/source/atlas/Control/AthenaExamples/AthExHistNtup/cmt/requirements):
  Hist.cxx, Hist.h, requirements
  

• Ntuples Booking and Filling(http://alxr.usatlas.bnl.gov/lxr/source/atlas/Control/AthenaExamples/AthExHistNtup/src/Ntup.cxx, http://alxr.usatlas.bnl.gov/lxr/source/atlas/Control/AthenaExamples/AthExHistNtup/AthExHistNtup/Ntup.h):
  Ntup.cxx, Ntup.h
  

• There are many good examples on how to read and write data, how to use iterators and so on in (http://alxr.usatlas.bnl.gov/lxr/source/atlas/Control/AthenaExamples/): AthenaExamples.
  
• Here is a full example of code reading an AOD file and filling an histogram and a ntuple:
  MyZmumu.h, class and method declaration
  MyZmumu.cxx, the methods
  requirements, includes all libraries to be linked in the compilation (similar to the buildjob of AC)
  MyAODAna_jobOptions.py, job option files for athena.

Setup Script for Athena

this script create a .csh file to setup the desired Athena version. (download, chmod u+x setupathena.pl , ./setupathena.pl): setupathena.pl

this is an example of csh file for the version 11.0.5: setupathena11.0.5.csh

Sector 13

• Instructions on how to run the Muon Commissioning package (create ntuples with sector 13 data) (https://twiki.cern.ch/twiki/bin/view/Atlas/MuonCommRecoInstructions): Muon Commissioning package.
  
• The list of available runs is here (https://twiki.cern.ch/twiki/bin/view/Atlas/ListofRunsforOfflineAnalysis).
  
• You can check also the Elog (run list in Trigger & Daq) here (http://pcroma2b5.cern.ch:8080/).
  
• A short list of the variables available in the nuples is here (https://twiki.cern.ch/twiki/bin/view/Atlas/RawDataAna).
  
• Check sector 13 status here (https://twiki.cern.ch/twiki/bin/view/Atlas/MuonCommSoftware).
  Check naming and conventions here (http://atlasinfo.cern.ch/Atlas/GROUPS/MUON/TDR/pdf_final/naming.pdf).
  

CSC NOTE

CSC Note In Situ Determination Of Muon Spectrometer Performance here (https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/CSCNoteInSituDeterminationOfMuonSpectrometerPerformance).
Complete list of CSC Notes here (https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/CSCNotesList).

TDR

Inner Detector (http://atlas.web.cern.ch/Atlas/GROUPS/INNER_DETECTOR/TDR/tdr.html)
Tile Calorimeter (http://atlas.web.cern.ch/Atlas/SUB_DETECTORS/TILE/TDR/TDR.html)
LAr Calorimeter (http://atlas.web.cern.ch/Atlas/GROUPS/LIQARGON/TDR/)
Calorimeter Performance (http://atlas.web.cern.ch/Atlas/TDR/caloperf/caloperf.html)
Muon Spectrometer (http://atlas.web.cern.ch/Atlas/GROUPS/MUON/TDR/Web/TDR.html)

MC Production

• Monitor for Dataset production
  Panda Monitor http://panda.cern.ch/
  Mei Wen Monitor http://www.lnf.infn.it/esperimenti/atlas/new/GRID/pag.html
  Other sites:
  Milano database page http://atlfarm003.mi.infn.it/~negri/mc11_dataset.htm
  BNL database page http://www.usatlas.bnl.gov/~dial/atprod/validation/html/
  links to the spreadsheets of the MC generation requests for CSC (DC3): ATLAS Computing Commissioning Requests
  http://jarguin.home.cern.ch/jarguin/dc3requests.html),
  
• Check here the File naming convention
  https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/FileNamingConvention
  
• FieldMaps in Simulation here (https://twiki.cern.ch/twiki/bin/view/Atlas/FieldMaps).
  
• Distorted Material in CSC Simulation here (https://twiki.cern.ch/twiki/bin/view/Atlas/DistortedMaterial).
  
• Setting Geometry Version here (https://twiki.cern.ch/twiki/bin/view/Atlas/SettingGeometryVersion).
  
• Step by step instructions to run reconstruction here (https://twiki.cern.ch/twiki/bin/view/Atlas/RunningReconstruction).
  
• GeneratorTutorial1203 here (https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/GeneratorTutorial1203).
  
• Working with COOL Tags here (https://twiki.cern.ch/twiki/bin/view/Atlas/CoolTagging).
  
• Atlas Database Release here (https://twiki.cern.ch/twiki/bin/view/Atlas/AtlasDBRelease).
  

Job Submission

• Ganga http://ganga.web.cern.ch/ganga/
  GANGA,
  and http://ganga.web.cern.ch/ganga/user
  Documentation
  
• Tutorial https://twiki.cern.ch/twiki/bin/view/Atlas/GangaTutorial44
  ATLAS TUTORIAL
  
• ATLAS Italia Shifts http://classis01.roma1.infn.it/wiki/bin/view/ATLASItalia/ATLASItaliaShifts?skin=plain
  ATLAS Italia Shifts
  
• ATLAS Italia Job Execution https://t2-wn-51.roma1.infn.it/wiki/bin/view/ATLASItalia/ATLASItaliaSoftJobExecution
  ATLAS Italia Job Execution
  

How to get files

• https://twiki.cern.ch/twiki/bin/view/Atlas/UsingDQ2
  DQ2, this page describes how to access CSC data using DQ2. To browse the dataset goto
• http://gridui02.usatlas.bnl.gov:25880/server/pandamon/query?overview=dslist
  DQ2 Dataset Browser. See also
• https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/CscGetFiles
  CscGetFiles.
  
• The ATLAS Metadata Interface Portal Page http://ami.in2p3.fr/opencms/opencms/AMI/www/index.html
  

Trigger

• Trigger Decision Tool https://twiki.cern.ch/twiki/bin/view/Atlas/TrigDecisionTool
  
• Barrel L1 Muon Trigger http://sunset.roma1.infn.it:16080/muonl1/
  
• L1 TDR MUON
  
• RPC DATA FORMAT
  
• Trigger Tutorial https://twiki.cern.ch/twiki/bin/view/Atlas/PATTriggerTutorial1206
  
• PESA Physics and Event Selection Architecture http://atlas.web.cern.ch/Atlas/GROUPS/DAQTRIG/PESA/pesa.html
  

WZ Analysis

• W,Z analysis Twiki https://twiki.cern.ch/twiki/bin/view/Sandbox/WandZAnalysis
  
• EWPA Analysis Framework https://twiki.cern.ch/twiki/bin/viewauth/AtlasProtected/EWPAMainPage
  
• CDF Run 2 Electroweak Public Results http://www-cdf.fnal.gov/physics/ewk/
  
• WZ to muons Wiki Page https://twiki.cern.ch/twiki/bin/view/AtlasProtected/WZObservationWithMuons
  

DESD

• Muon DESD https://twiki.cern.ch/twiki/bin/view/AtlasProtected/MuonCombinedFiltersAndDESD